1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtgggcgccagaacccagggatttcagggggcatgtagcactgatccacggcagtgctccaagcgtgcagggaggtgctgcactcccttacctgatcaccttttgtcagccaccggacgcggtttgctgctgcagGATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCCAATGCTGGACCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06422 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTTCGAG GATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGEST: gi|23358667|gb|BU646487.1|BU646487
genomic: CGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTTCGAGgtatgtgggc ... gctgctgcagGATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGG
EST: CGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTTCGAG GATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCCEST: gi|15698577|gb|BI722882.1|BI722882
genomic: CGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTTCGAGgtatgtgggc ... gctgctgcagGATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCC
EST: CGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTTCGAG GATGAGAACTTCAAGCTGCGGCATGACACTTGCCGG-CTCCTGGCTATGGC
genomic: CGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTTCGAGgtatgtgggc ... gctgctgcagGATGAGAACTTCAAGCTGCGGCATGACACT-GCCGGGCTCCTGGCTATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgggcgccagaacccagggatttcagggggcatgtagcactgatccacggcagtgctccaagcgtgcagggaggtgctgcactcccttacctgatcaccttttgtcagccaccggacgcggtttgctgctgcagGATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCCAATGCTGGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA