1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaggtgtgggcccttgcacgccagtgcctatgcacacgtgtaggcggcgatgcgcgtgtggggtcatgggactaaacgccttccctgttgtgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAGCTAGAGGTGCATCCCAAGCGCCTGCGCCTGTCTGTGGGCGGCAAGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP06422 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAEST: gi|6542036|gb|AV387820.1|AV387820
genomic: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
EST: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAEST: gi|10775274|gb|AV631954.1|AV631954
genomic: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
EST: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAEST: gi|49462862|gb|BP090775.1|BP090775
genomic: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
EST: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAEST: gi|16428752|gb|BI993978.1|BI993978
genomic: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
EST: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAEST: gi|15698577|gb|BI722882.1|BI722882
genomic: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
EST: CGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAEST: gi|22065115|gb|BQ816186.1|BQ816186
genomic: CGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
EST: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
genomic: GACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGAgtgagtgccg ... tgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAA
ggcgatgcgcgtgtggggtcatgggactaaacgccttccctgttgtgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAGCTAGAGGTGCATCCCAAGCGCCTGCGCCTGTCTGTGGGCGGCAAGGCG
gactaaa putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggtgtgggcccttgcacgccagtgcctatgcacacgtgtaggcggcgatgcgcgtgtggggtcatgggactaaacgccttccctgttgtgcaccacagGGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAGCTAGAGGTGCATCCCAAGCGCCTGCGCCTGTCTGTGGGCGGCAAGGCG
- -gtgtggg
- - - - - - cttgcac
- - - - - - - - - - - - - - -atgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtgtg