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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccagccaaccgcagctgcggaaatgttggggcctgataccagggcagccagtttgggactttggggcattcgggttgagatggcatcatgcgcgtccttctatcgtcttggtacggtacttcactgttactgcactctaatttattgtctgcaactgatcattcatttatttttggtggtgcatgcagGTTCCACCGCATCATTCCGGGCTTCATGATCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06422
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771698|gb|AV622521.1|AV622521
EST:     AAGGGCAAGTCGGAGGTCAGTGGCGTGGAGCTCAGCTTCAAGGGCAGCAA                         GTTCCACCGCATCATTCCGGGCTTCATGATCCAG
genomic: AAGGGCAAGTCGGAGGTCAGTGGCGTGGAGCTCAGCTTCAAGGGCAGCAAgtaagtccag ... gtgcatgcagGTTCCACCGCATCATTCCGGGCTTCATGATCCAG
EST: gi|23358667|gb|BU646487.1|BU646487
EST:     AAGGGCAAGTCGGAGGTCAGTGGCGTGGAGCTCAGCTTCAAGGGCAGCAA                         GTTCCACCGCATCATTCCGGGCTTCATGATCCAG
genomic: AAGGGCAAGTCGGAGGTCAGTGGCGTGGAGCTCAGCTTCAAGGGCAGCAAgtaagtccag ... gtgcatgcagGTTCCACCGCATCATTCCGGGCTTCATGATCCAG
EST: gi|15698577|gb|BI722882.1|BI722882
EST:     AAGGGCAAGTCGGAGGTCAGTGGCGTGGAGCTCAGCTTCAAGGGCAGCAA                         GTTCCACCGCATCATTCCGGGCTTCATGATCCAG
genomic: AAGGGCAAGTCGGAGGTCAGTGGCGTGGAGCTCAGCTTCAAGGGCAGCAAgtaagtccag ... gtgcatgcagGTTCCACCGCATCATTCCGGGCTTCATGATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctaatttattgtctgcaactgatcattcatttatttttggtggtgcatgcagGTTCCACCGCATCATTCCGGGCTTCATGATCCAG
                   aactgat  putative branch site (score: 3)
                        atcattcatttatttt  TA-rich tract