1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAGgtgcgcggcttcttgctgtgacagccgccccggatgacctgcattcaattgccggtaccagctgggattcctgcccagactgctaggtcgcggtcagaccgacttgccagctttttgcgtacccctggctgtataccgtagccttgcgcccccggcatcgatcgctgccccttcctctcgtatag
species | Chlamydomonas reinhardtii |
transcript | EDP06278 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG GGCTTCTCGGCCGGCGTACGGAAGCTGATGGACGCGGTGCTGGAGCTGCAGEST: gi|16073522|gb|BI875518.1|BI875518
genomic: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAGgtgcgcggct ... tctcgtatagGGCTTCTCGGCCGGCGTACGGAAGCTGATGGACGCGGTGCTGGAGCTGCAG
EST: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG GGCTTCTCGGCCGGCGTACGGAAGCTGATGGACGCGGTGCTGGAGCTGCAGEST: gi|15698892|gb|BI723197.1|BI723197
genomic: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAGgtgcgcggct ... tctcgtatagGGCTTCTCGGCCGGCGTACGGAAGCTGATGGACGCGGTGCTGGAGCTGCAG
EST: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG GGCTTCTCGGCCCGCGTACGGAAGCTGATEST: gi|15698891|gb|BI723196.1|BI723196
genomic: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAGgtgcgcggct ... tctcgtatagGGCTTCTCGGCCGGCGTACGGAAGCTGAT
EST: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG GGCTTCTCGGCCGGCGTACGGAAGCTGATGGACGCGGTGCTGGAGCTGCAG
genomic: GCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAGgtgcgcggct ... tctcgtatagGGCTTCTCGGCCGGCGTACGGAAGCTGATGGACGCGGTGCTGGAGCTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAGgtgcgcggcttcttgctgtgacagccgccccggatgacctgcattcaattgccggtaccagctgggattcctgcccagactgctaggtcgcggtcagaccgacttgccagctttttgcgtacccctggctgtataccgtagccttgcgcccccggcatcgatcgctgccccttcctctcgtatag
- - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG