1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggcggggagaggttggaaaggctcttcacgccttctatcccagcctccatggctatggaccagttcctcagggctaggccgttcctcagggctaggcttgcttagcgcgacctgtctcattgctggcagggcactgcttcggttgttatttcgctgacgctccctcccgccttcctggcatggtctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTACCAAGGGGACTACCAAGGAGGGCGCTACAGCGCTGATGGCTGACACGCG
species | Chlamydomonas reinhardtii |
transcript | EDP06278 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAG ATACGCGCGCAACGGANNNNNNNATGAAAGCGGCGAGCACCACCGCAGCTAEST: gi|15698892|gb|BI723197.1|BI723197
genomic: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAGgtaggcgggg ... ctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTA
EST: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAG ATACGCGCGCAACGGACCCACCCATGAAAGCGGCGAGCACCACCGCAGCTAEST: gi|10773110|gb|AV623933.1|AV623933
genomic: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAGgtaggcgggg ... ctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTA
EST: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAG ATACGCGCGCAACGGANNNNNNNATGAAAGCGGCGAGCACCACCGCAGCTAEST: gi|15698890|gb|BI723195.1|BI723195
genomic: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAGgtaggcgggg ... ctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTA
EST: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAG ATACGCGCGCAACGGACCCACCCATGAAAGCGGCGAGCACCACCGCAGCTAEST: gi|15698891|gb|BI723196.1|BI723196
genomic: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAGgtaggcgggg ... ctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTA
EST: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAG ATACGCGCGCAACGGACCCACCCATGAAAGCGGCGAGCACCACCGCAGCTA
genomic: CACGCTTACAAGGGCCCTCAAGGAACAAACGAACCTGGCGCACAGCCCAGgtaggcgggg ... ctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTA
cggttgttatttcgctgacgctccctcccgccttcctggcatggtctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTACCAAGGGGACTACCAAGGAGGGCGCTACAGCGCTGATGGCTGACACGCG
cgctgac putative branch site (score: 3)
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcggggagaggttggaaaggctcttcacgccttctatcccagcctccatggctatggaccagttcctcagggctaggccgttcctcagggctaggcttgcttagcgcgacctgtctcattgctggcagggcactgcttcggttgttatttcgctgacgctccctcccgccttcctggcatggtctggtgttagATACGCGCGCAACGGACCCCCCCATGAAAGCGGCGAGCACCACCGCAGCTACCAAGGGGACTACCAAGGAGGGCGCTACAGCGCTGATGGCTGACACGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT