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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctccggcttccgcaccgggcccagggcagtcaagggacgtcgcgctcctggaccggccttggccacctctgctgccccctcgggcccgaactcgacgtcctgctgcttacgacgcacgcatctgtgcctggtattaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06278
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49464377|gb|BP092290.1|BP092290
EST:     CTGGGAACTCGAGGGCATCAGCATCTCTGGCCAG                         GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
genomic: CTGGGAACTCGAGGGCATCAGCATCTCTGGCCAGgtacctccgg ... ttaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
EST: gi|16073522|gb|BI875518.1|BI875518
EST:     AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAG                         GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
genomic: AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAGgtacctccgg ... ttaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
EST: gi|15698892|gb|BI723197.1|BI723197
EST:     AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAG                         GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
genomic: AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAGgtacctccgg ... ttaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
EST: gi|10773110|gb|AV623933.1|AV623933
EST:     AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAG                         GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
genomic: AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAGgtacctccgg ... ttaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
EST: gi|15698890|gb|BI723195.1|BI723195
EST:     AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAG                         GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
genomic: AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAGgtacctccgg ... ttaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
EST: gi|15698891|gb|BI723196.1|BI723196
EST:     AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAG                         GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
genomic: AGCTGGCGGTCAGCGGCTGGGAACTCGAGGGCATCAGCATCTCTGGCCAGgtacctccgg ... ttaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcgacgtcctgctgcttacgacgcacgcatctgtgcctggtattaatcacagGAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG
                                           tattaat  putative branch site (score: 2)
                                           tattaatca  TA-rich tract