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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccacccacctggggttctgagggctgaacggaagccgtggttgcaatgatacgcttgcatcattccggtgccccggaggctgatggttgtgccctgcacatacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06278
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49464377|gb|BP092290.1|BP092290
EST:     GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG                         GCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
genomic: GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccac ... gcacatacagGCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
EST: gi|16073522|gb|BI875518.1|BI875518
EST:     GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG                         GCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
genomic: GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccac ... gcacatacagGCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
EST: gi|15698892|gb|BI723197.1|BI723197
EST:     GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG                         GCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
genomic: GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccac ... gcacatacagGCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
EST: gi|10773110|gb|AV623933.1|AV623933
EST:     GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG                         GCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
genomic: GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccac ... gcacatacagGCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
EST: gi|15698890|gb|BI723195.1|BI723195
EST:     GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG                         GCGGTGTCCCCAGCGCGCCTGCTTCCAGCAAACCGTGCTGCTCAGCCACAC
genomic: GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccac ... gcacatacagGCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
EST: gi|15698891|gb|BI723196.1|BI723196
EST:     GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGG                         GCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC
genomic: GAGACAAGCATCATTGTGCCTCGCGCCAAAGTGACCTTCGACATCGGgtagggccac ... gcacatacagGCGGTGTCCCCAGCGCGCCTGCTTCCAGCAGACCGTGCTGCTCAGCCACAC