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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCATCTCAACTATGACAACAGCAGATGGGCTTCGGGGTGCATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacctaaattttataccacagtctgaaattgcagttttgacgcaagggctgagcccaaggccccttatttactgcatagtacattaaacccgcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05806
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789639|gb|AV627004.1|AV627004
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|10789608|gb|AV626973.1|AV626973
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|10792473|gb|AV629839.1|AV629839
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|10791527|gb|AV628893.1|AV628893
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|10793639|gb|AV631005.1|AV631005
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|10127586|gb|BE726290.1|BE726290
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCACTGGCGGAGAGGCTTAATGAGCTGAAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|10793380|gb|AV630746.1|AV630746
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: gi|49468598|gb|BP096459.1|BP096459
EST:     ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG                         CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCCATCTCAACTATGACAACAGCAGATGGGCTTCGGGGTGCATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacctaaattttataccacagtctgaaattgcagttttgacgcaagggctgagcccaaggccccttatttactgcatagtacattaaacccgcg

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acattaa