1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgctgcacgctccaggctgacaaagcccacccgtttcgtgcccttcctcggccaatgtaactctcactcacgtcctgtccccaacccccacggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGGCCCCGTCCACGGGCCGGGCGGCTTTACGCGCGGCGGATTGGCGGGTCC
species | Chlamydomonas reinhardtii |
transcript | EDP05806 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGEST: gi|10789608|gb|AV626973.1|AV626973
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGEST: gi|10792473|gb|AV629839.1|AV629839
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGEST: gi|10791527|gb|AV628893.1|AV628893
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGEST: gi|10793639|gb|AV631005.1|AV631005
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGEST: gi|10127586|gb|BE726290.1|BE726290
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCACTGGCGGAGAGGCTTAATGAGCTGAAGCTTGGGGCTCGGGGCCGGGEST: gi|10793380|gb|AV630746.1|AV630746
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGEST: gi|49468598|gb|BP096459.1|BP096459
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
EST: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGG CTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
genomic: ATATGCTTTCGGAGGAATGCCGACGGCTGTGCAGGGAGCGGATGAGGCGGgtgagtgacc ... cggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGG
cctcggccaatgtaactctcactcacgtcctgtccccaacccccacggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGGCCCCGTCCACGGGCCGGGCGGCTTTACGCGCGGCGGATTGGCGGGTCC
cactcac putative branch site (score: 2)
cccccac putative PPT
aatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgcacgctccaggctgacaaagcccacccgtttcgtgcccttcctcggccaatgtaactctcactcacgtcctgtccccaacccccacggactgcagCTGCGCTGGCGGAGAGGCTTAATGAGCTGCAGCTTGGGGCTCGGGGCCGGGGCCCCGTCCACGGGCCGGGCGGCTTTACGCGCGGCGGATTGGCGGGTCC
- -tgcacgc
- - - - - - - - - -acaaagc
- - - - - - - - - - - - - - - - -tttcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accccca