1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATCAAGCAAGAGTACGACGTGGCGCTGGACGACGCGCTGGCGTCACTGTATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcgcggtgtggcgtggctggctgacaggacgtagttgggttccatccttcggtgtttgctgttgcagccttgcagagccccctgcgtgcgatgcgaccagtggcgttcttcgacccttacaaccctcttgtaacaaatgcgatctacccgctccgtggtcaacgctgcgctccctttgcctggacacgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05785 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATG GCCACGGCGGTGCAEST: gi|8287200|gb|BE024759.1|BE024759
genomic: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcg ... ggacacgcagGCCACGGCGGTGCA
EST: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATG GCCACGGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCCEST: gi|161811016|gb|FC095271.1|FC095271
genomic: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcg ... ggacacgcagGCCACGGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCC
EST: ATGATAACGTGCACATGAAAGCGGAGCTGGCGGTGGTGGACGAGCGCATG GCCACGGCGGTGCAGCAGGCGCGTGCTCGTGCCATEST: gi|10126239|gb|BE724943.1|BE724943
genomic: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcg ... ggacacgcagGCCACGGCGGTGCAGCAGGCGCGCGCTCGTGCCAT
EST: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATG GCCACGGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCCEST: gi|161790024|gb|FC077147.1|FC077147
genomic: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcg ... ggacacgcagGCCACGGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCC
EST: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATG GCCACGGCGGTGCAGCAGGCGCGTGCTCGTGCCATGGAGGACGCCAGCGCC
genomic: ATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcg ... ggacacgcagGCCACGGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAAGCAAGAGTACGACGTGGCGCTGGACGACGCGCTGGCGTCACTGTATGATAACGTGCACATGAAGGCGGAGCTGGCGGTGGTGGACGAGCGCATGgtgcgtggcgcggtgtggcgtggctggctgacaggacgtagttgggttccatccttcggtgtttgctgttgcagccttgcagagccccctgcgtgcgatgcgaccagtggcgttcttcgacccttacaaccctcttgtaacaaatgcgatctacccgctccgtggtcaacgctgcgctccctttgcctggacacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA