1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCAGGCGAACAAGTGAGCCCTCGCGGACGGAGCCAGCGCGTGCTTTCTGTGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgacacgcgtgcacgcaccggtgttgttgggaagcgggggggggcagctgcgagcgcgccagcgtattcctgtctcagcgcaagcaccggcagt...
species | Chlamydomonas reinhardtii |
transcript | EDP05785 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAG CACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGGEST: gi|22065476|gb|BQ816376.1|BQ816376
genomic: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgac ... acccccacagCACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
EST: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAG CACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGGEST: gi|10781868|gb|AV638548.1|AV638548
genomic: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgac ... acccccacagCACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
EST: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAG CACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGGEST: gi|161811016|gb|FC095271.1|FC095271
genomic: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgac ... acccccacagCACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
EST: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAG CACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGGEST: gi|15693970|gb|BI718275.1|BI718275
genomic: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgac ... acccccacagCACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
EST: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAG CACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGGEST: gi|9460292|gb|BE453159.1|BE453159
genomic: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgac ... acccccacagCACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
EST: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAG CACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
genomic: TGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgac ... acccccacagCACGCTGCCGGTGTCGGCGCTGCAAGGGAGCGCCAGCCCTCGCAACGTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGGCGAACAAGTGAGCCCTCGCGGACGGAGCCAGCGCGTGCTTTCTGTGGAGCACGCTTAGCATAGCTAGCGAAGGCATGGAGGTGCAGGTTCCGAGgtgagtcgacacgcgtgcacgcaccggtgttgttgggaagcgggggggggcagctgcgagcgcgccagcgtattcctgtctcagcgcaagcaccggcagt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcac