1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCAAAAGAATGGCCTGCTGTCCTTGCGGCCAACATACTCGAACGAGCCCATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccaccttgaagagcatgcaagtagcatgtaggggcgtcagtgcagtgcgctggaacctctcaaatctccatgaagtccatggggcgtgtactgtgcgaggcttgagctgtagcttcggtgcctgtgctcggccgtcgtcgctcaacaagctggcactcatttgcacgtgacgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05785 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCG GCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAAEST: gi|22065476|gb|BQ816376.1|BQ816376
genomic: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccac ... cgtgacgcagGCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAA
EST: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCG GCTTGAGGCTTTGNTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAAEST: gi|161811016|gb|FC095271.1|FC095271
genomic: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccac ... cgtgacgcagGCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAA
EST: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCG GCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAAEST: gi|15693970|gb|BI718275.1|BI718275
genomic: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccac ... cgtgacgcagGCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAA
EST: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCG GCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAAEST: gi|9460292|gb|BE453159.1|BE453159
genomic: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccac ... cgtgacgcagGCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCAA
EST: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCG GCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCA
genomic: ATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccac ... cgtgacgcagGCTTGAGGCTTTGTTGGAGGAGAAGCTGGGCCTGGTGGAGCGGCTGGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAAAAGAATGGCCTGCTGTCCTTGCGGCCAACATACTCGAACGAGCCCATTGGGGGTGATGAAGACGACGCTGGGCGAACGCCAAAGCTGCTGCAGCGgtaagcccaccttgaagagcatgcaagtagcatgtaggggcgtcagtgcagtgcgctggaacctctcaaatctccatgaagtccatggggcgtgtactgtgcgaggcttgagctgtagcttcggtgcctgtgctcggccgtcgtcgctcaacaagctggcactcatttgcacgtgacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG