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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggctccatgtgataggagcacagggcgtgtcctagtcaagcgctgccgttgacgcgcgcaatcgccaccgctgggcgccgctcactgcacatgccaccaccccttgcgctgtcgcacagGTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTGCGCATCAAGCAAGAGTACGACGTGGCGCTGGACGACGCGCTGGCGTCAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05785
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161790025|gb|FC077148.1|FC077148
EST:     GCAACAAGGGCTTCGCGGCGGCACAGCTGCGCACGGACGCATTCCGACAG                         GTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTG
genomic: GCAACAAGGGCTTCGCGGCGGCACAGCTGCGCACGGACGCATTCCGACAGgtgcggctcc ... tgtcgcacagGTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTG
EST: gi|161811016|gb|FC095271.1|FC095271
EST:     GCAACAAGGGCTTCGCGGCGGCACAGCTGCGCACGGACGCATTCCGACAG                         GTGTTTGACGCCTTCCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCT
genomic: GCAACAAGGGCTTCGCGGCGGCACAGCTGCGCACGGACGCATTCCGACAGgtgcggctcc ... tgtcgcacagGTGTTTGACGCCTTCC-TGCACAGCTTCACAACGTACCGCTCGCTGCTGCT
EST: gi|15693970|gb|BI718275.1|BI718275
EST:     GCAACAAGGGCTTCGCGGCGGCACAGCTGCGCACGGACGCATTCCGACAG                         GTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTG
genomic: GCAACAAGGGCTTCGCGGCGGCACAGCTGCGCACGGACGCATTCCGACAGgtgcggctcc ... tgtcgcacagGTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccgctgggcgccgctcactgcacatgccaccaccccttgcgctgtcgcacagGTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTGCGCATCAAGCAAGAGTACGACGTGGCGCTGGACGACGCGCTGGCGTCAC
              cgctcac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggctccatgtgataggagcacagggcgtgtcctagtcaagcgctgccgttgacgcgcgcaatcgccaccgctgggcgccgctcactgcacatgccaccaccccttgcgctgtcgcacagGTGTTTGACGCCTTCCTGCACAGCTTCACAACGTACCGCTCGCTGCTGCTGCGCATCAAGCAAGAGTACGACGTGGCGCTGGACGACGCGCTGGCGTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA