1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACATgtgagtctggcacgaaggggtgtgcgccgcatgcagggtgacgcagcggctgagtcctagctcccaccaggctctcgctggtccgcaccccaccgccaaacaacctcacacaaacaataccttgaactaactctttggggcctacaccgaccgttcgtcatgcgttgtcacacag
species | Chlamydomonas reinhardtii |
transcript | EDP05654 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACAT GGCGGTGCTGCTGAAGAAGTTTGTGGTGGGCGGCATCACGCTCAGCCCGGGEST: gi|15368078|gb|BI527504.1|BI527504
genomic: TCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACATgtgagtctgg ... tgtcacacagGGCGGTGCTGCTGAAGAAGTTTGTGGTGGGCGGCATCACGCTCAGCCCGGG
EST: TCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACAT GGCGGTGCTGCTGAAGAAGTTTGTGGTGGGCGGCATCACGCTCAGCCCGGGEST: gi|9210681|gb|BE337596.1|BE337596
genomic: TCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACATgtgagtctgg ... tgtcacacagGGCGGTGCTGCTGAAGAAGTTTGTGGTGGGCGGCATCACGCTCAGCCCGGG
EST: TCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACAT GGCGGTGCTGCTGAAGAAGTTTGTGGTGGGCGGCATCACGCTCAGCCCGGG
genomic: TCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACATgtgagtctgg ... tgtcacacagGGCGGTGCTGCTGAAGAAGTTTGTGGTGGGCGGCATCACGCTCAGCCCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACATgtgagtctggcacgaaggggtgtgcgccgcatgcagggtgacgcagcggctgagtcctagctcccaccaggctctcgctggtccgcaccccaccgccaaacaacctcacacaaacaataccttgaactaactctttggggcctacaccgaccgttcgtcatgcgttgtcacacag
- - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG