1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcctcctgtgctgtggggcgtgccgtgtgggcgcgtgcaatacgggggcatgcgcaagagcatacgggcgtcacaagcagtagtccgggctttgcgcgacccacaagtagcccaaccgtcaagtagtccaagagacacgcgcaacgcgctctgcccgtgcccgccctcaaacctgcatccctgcagACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACAT
species | Chlamydomonas reinhardtii |
transcript | EDP05654 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTGATGGAGCTGGTTCGGGAGGGCTCCTCGCCCCACGTCGACCTGCTG ACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGEST: gi|15368078|gb|BI527504.1|BI527504
genomic: GCGTGATGGAGCTGGTTCGGGAGGGCTCCTCGCCCCACGTCGACCTGCTGgtgagcctcc ... atccctgcagACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTG
EST: GCGTGATGGAGCTGGTTCGGGAGGGCTCCTCGCCCCACGTCGACCTGCTG ACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGEST: gi|9210681|gb|BE337596.1|BE337596
genomic: GCGTGATGGAGCTGGTTCGGGAGGGCTCCTCGCCCCACGTCGACCTGCTGgtgagcctcc ... atccctgcagACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTG
EST: GCGTGATGGAGCTGGTTCGGGAGGGCTCCTCGCCCCACGTCGACCTGCTG ACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTG
genomic: GCGTGATGGAGCTGGTTCGGGAGGGCTCCTCGCCCCACGTCGACCTGCTGgtgagcctcc ... atccctgcagACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTG
gagacacgcgcaacgcgctctgcccgtgcccgccctcaaacctgcatccctgcagACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACAT
catccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcctcctgtgctgtggggcgtgccgtgtgggcgcgtgcaatacgggggcatgcgcaagagcatacgggcgtcacaagcagtagtccgggctttgcgcgacccacaagtagcccaaccgtcaagtagtccaagagacacgcgcaacgcgctctgcccgtgcccgccctcaaacctgcatccctgcagACCAGCGTTCTGGCCAACGTCACCATCAGCGAGGGCGGCTCCCGGCAGTTGCTGCAGATCGGCCAGGGCAACATGGAGGGACTCCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG