1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgatgcagcaacaggttttaagccatcgcgctatgtgaacaaacaaatgcttcctcggccggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGATGGTATAGAAAAGCTGAAATCGCTGCAGCGCCCGCTGGTCACCAAGCTGT
species | Chlamydomonas reinhardtii |
transcript | EDP05654 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAG GTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGATEST: gi|9210681|gb|BE337596.1|BE337596
genomic: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAGgtatgatgca ... ggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGAT
EST: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAG GTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGAT
genomic: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAGgtatgatgca ... ggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGAT
ttttaagccatcgcgctatgtgaacaaacaaatgcttcctcggccggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGATGGTATAGAAAAGCTGAAATCGCTGCAGCGCCCGCTGGTCACCAAGCTGT
aaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgcagcaacaggttttaagccatcgcgctatgtgaacaaacaaatgcttcctcggccggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGATGGTATAGAAAAGCTGAAATCGCTGCAGCGCCCGCTGGTCACCAAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG