1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAAGCCCATTGAACGCGTGATAACAGGCCAATATGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAGgtatgatgcagcaacaggttttaagccatcgcgctatgtgaacaaacaaatgcttcctcggccggcgccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05654 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAG GTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGATEST: gi|9210681|gb|BE337596.1|BE337596
genomic: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAGgtatgatgca ... ggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGAT
EST: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAG GTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGAT
genomic: TGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAGgtatgatgca ... ggcgccgcagGTTCGGTCCACGGCGGCAGAGATTGTTTCTGGGCTTACTGCGTCACCCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGCCCATTGAACGCGTGATAACAGGCCAATATGAGTGAATTGGAAGAACTTGTCGGCTTCCTTGACAATTCTAGACCAGAGgtatgatgcagcaacaggttttaagccatcgcgctatgtgaacaaacaaatgcttcctcggccggcgccgcag
- - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC