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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctaggggcaagctgccggcgcgctggtacccgtccgttgtctgtcgtcagtgcactgacccccgcgtttcctatggtcgcagCATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAGCAAATAGCCTTCGCGGACCTCATCCTGCTTAATAAAATTGACTTGGTGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04575
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697864|gb|BI722169.1|BI722169
EST:     TTGCGTCGTGGACGCGCGCTACTTGATGCAG                         CATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
genomic: TTGCGTCGTGGACGCGCGCTACTTGATGCAGgtgagctagg ... atggtcgcagCATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
EST: gi|23362561|gb|BU650381.1|BU650381
EST:     CATTTGCGTCGTGGACGCGCGCTACTTGATGCAG                         CATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
genomic: CATTTGCGTCGTGGACGCGCGCTACTTGATGCAGgtgagctagg ... atggtcgcagCATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
EST: gi|10791429|gb|AV628795.1|AV628795
EST:     TTGCGTCGTGGACGCGCGCTACTTGATGCAG                         CATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
genomic: TTGCGTCGTGGACGCGCGCTACTTGATGCAGgtgagctagg ... atggtcgcagCATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
EST: gi|49470654|gb|BP098515.1|BP098515
EST:     TTGCGTCGTGGACGCGCGCTACTTGATGCAG                         CATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG
genomic: TTGCGTCGTGGACGCGCGCTACTTGATGCAGgtgagctagg ... atggtcgcagCATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccgtccgttgtctgtcgtcagtgcactgacccccgcgtttcctatggtcgcagCATTTGGAGGACGGCAAGCACTCGGATGGCACCGTGAACGAGGCGGTGCAGCAAATAGCCTTCGCGGACCTCATCCTGCTTAATAAAATTGACTTGGTGA
                         cactgac  putative branch site (score: 2)
                                       tttcctat  putative PPT