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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCATTTCGCCAGAATGGCCAGCGCCGGTGCCACCGCCCCGACAAACGTTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccaggactcgatagctgctcgggttcgttccctggcgcggagaaaccagcgcggcagtggtcagcggtgatgctgacgcgcctgtgtgtcctttccatag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04575
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697864|gb|BI722169.1|BI722169
EST:     TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG                         GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
EST: gi|10793379|gb|AV630745.1|AV630745
EST:     TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG                         GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
EST: gi|49468237|gb|BP096098.1|BP096098
EST:     TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG                         GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
EST: gi|49466914|gb|BP094827.1|BP094827
EST:     TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG                         GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG