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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttgcatgcttaggcctgctgtttttgcgccgctactggtcgcttgagtttgcgctgatgccacttgtgcccctgcgccgcgcagTTGCGTCGTGGACGCGCGCTACTTGATGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04575
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697864|gb|BI722169.1|BI722169
EST:     TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCAT                         TTGCGTCGTGGACGCGCGCTACTTGATGCAG
genomic: TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCATgtgagccttg ... cgccgcgcagTTGCGTCGTGGACGCGCGCTACTTGATGCAG
EST: gi|10793379|gb|AV630745.1|AV630745
EST:     TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCAT                         TTGCGTCGTGGACGCGCGCTACTTGATGC
genomic: TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCATgtgagccttg ... cgccgcgcagTTGCGTCGTGGACGCGCGCTACTTGATGC
EST: gi|10791429|gb|AV628795.1|AV628795
EST:     TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCAT                         TTGCGTCGTGGACGCGCGCTACTTGATGCAG
genomic: TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCATgtgagccttg ... cgccgcgcagTTGCGTCGTGGACGCGCGCTACTTGATGCAG
EST: gi|49470654|gb|BP098515.1|BP098515
EST:     TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCAT                         TTGCGTCGTGGACGCGCGCTACTTGATGCAG
genomic: TTCTTCGCCAACCCGTGGATTGCCTCGCGTTTCCGGCTCGACAGTATCATgtgagccttg ... cgccgcgcagTTGCGTCGTGGACGCGCGCTACTTGATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctactggtcgcttgagtttgcgctgatgccacttgtgcccctgcgccgcgcagTTGCGTCGTGGACGCGCGCTACTTGATGCAG
                      cgctgat  putative branch site (score: 4)
                                       cccctgc  putative PPT