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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgggcaaaggtcaaatgccggtattgccttgccgggcggggggccgctgcgagctaggtggggtccctggctatcctgggcaggtggtagggattttgaggggcccaacagctactttggcttgctcaaacctctaacgcacttcaacggcgtcctgaccgcgctgctgttggtcgtttgcggtcgcacagAATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04575
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697864|gb|BI722169.1|BI722169
EST:     TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAG                         AATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
genomic: TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAGgtgcgcgggc ... ggtcgcacagAATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
EST: gi|10793379|gb|AV630745.1|AV630745
EST:     TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAG                         AATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
genomic: TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAGgtgcgcgggc ... ggtcgcacagAATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
EST: gi|49468237|gb|BP096098.1|BP096098
EST:     TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATNGCTGTGATTGAG                         AATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
genomic: TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAGgtgcgcgggc ... ggtcgcacagAATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
EST: gi|49466914|gb|BP094827.1|BP094827
EST:     TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAG                         AATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
genomic: TAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAGgtgcgcgggc ... ggtcgcacagAATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcacttcaacggcgtcctgaccgcgctgctgttggtcgtttgcggtcgcacagAATGAATTCGGCGAGGTGAACATCGACCGCGAGCTGG
                tcctgac  putative branch site (score: 2)