1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtggggcctgtgccggcggctgcgggtctagcaccagtgggaaagtatggagctacgaggcgtgctggttcctgcatgcagccttgacaaagactgcgtgtcttctacagtgtagcacgtgcccccccccgctagcctcaccgccggccccgcgtcgcctacgcgtcccccgcccgcagGTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTGCTGGACGGCCGCTTCGCCGTGTTCGGCTACATCACGCAGGGCCAGGACG
species | Chlamydomonas reinhardtii |
transcript | EDP04524 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCCTGGCCTGGGCGCGCAATGAGTTTGAGAACAACAGCGCCTCCAGCCAG GTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTGEST: gi|16436444|gb|BM001664.1|BM001664
genomic: CCCTGGCCTGGGCGCGCAATGAGTTTGAGAACAACAGCGCCTCCAGCCAGgtggggcctg ... ccgcccgcagGTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTG
EST: ACAACAGCGCCTCCAGCCAG GTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTGEST: gi|14229849|gb|BG848665.1|BG848665
genomic: ACAACAGCGCCTCCAGCCAGgtggggcctg ... ccgcccgcagGTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTG
EST: CCCTGGCCTGGGCGCGCAATGAGTTTGAGAACAACAGCGCCTCCAGCCAG GTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTG
genomic: CCCTGGCCTGGGCGCGCAATGAGTTTGAGAACAACAGCGCCTCCAGCCAGgtggggcctg ... ccgcccgcagGTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTG
ccccccgctagcctcaccgccggccccgcgtcgcctacgcgtcccccgcccgcagGTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTGCTGGACGGCCGCTTCGCCGTGTTCGGCTACATCACGCAGGGCCAGGACG
gcctcac putative branch site (score: 3)
tcccccgccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggcctgtgccggcggctgcgggtctagcaccagtgggaaagtatggagctacgaggcgtgctggttcctgcatgcagccttgacaaagactgcgtgtcttctacagtgtagcacgtgcccccccccgctagcctcaccgccggccccgcgtcgcctacgcgtcccccgcccgcagGTGTTCTTCCTGCTCAAGGAGAGCGAGCTGACGCCCACCGGCTCCAACCTGCTGGACGGCCGCTTCGCCGTGTTCGGCTACATCACGCAGGGCCAGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA