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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGACGCCATTCTGGTTGCCAGCGACCCCGTGAAGAACGCTGCTGCTATTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgagtggctgggacaaccgcgcatgcaaagtgcgagctaaaactggctcgtatgggtgtgaattgcttcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04524
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462799|gb|BP090712.1|BP090712
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCC
EST: gi|10785797|gb|AV642469.1|AV642469
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
EST: gi|15692004|gb|BI716309.1|BI716309
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
EST: gi|161798131|gb|FC082667.1|FC082667
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
EST: gi|161801047|gb|FC083110.1|FC083110
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
EST: gi|10786302|gb|AV642974.1|AV642974
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
EST: gi|8287117|gb|BE024676.1|BE024676
EST:     TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAG                         AAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC
genomic: TTCTGCGCAACGCTCTGCCCATCGACAACAAGCCTATTCGGCAAATCCAGgtgaattgag ... tgcttcgcagAAAGACCTGGAGGGCATCAGCGAGGCGCTGCGCATCCCCGGCTCGAAGTCC