1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgcccacctccgcccgcacacacttcccgcccaccaccatccctcccacctcgctctcaccgcccctgcccaccgccacaccaccgccgccaccccccagGGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGGCCGCAGACGTTCACGCAGACGGTGGTGCTGGACGGCTACAACGCGCCCG
species | Chlamydomonas reinhardtii |
transcript | EDP04524 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCCCTTCCAGGTGCCCAAGGAGTACGCCGATCGTCCGCTGCTGCTG GGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGGEST: gi|15692004|gb|BI716309.1|BI716309
genomic: GCTTCCCCTTCCAGGTGCCCAAGGAGTACGCCGATCGTCCGCTGCTGCTGgtgaggagcg ... caccccccagGGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGG
EST: GCGCAACCCGCTCCAGAAGGCCGCAATTGGCCTGGCGACCGCTGCTGCTGTCGTTCTGGGCACCTTCGCCCCGCTGEST: gi|161798131|gb|FC082667.1|FC082667
genomic: GCGCAACCCGCTCCAGAAGGCCGCAATTGGCCTGGCGACCGCTGCTGCTGTCGTTCTGGGCACCTTCGCCCCGCTG
EST: GCGCAACCCGCTCCAGAAGGCCGCAATTGGCCTGGCGACCGCTGCTGCTGTCGTTCTGGGCACCTTCGCCCCGCTGEST: gi|161801047|gb|FC083110.1|FC083110
genomic: GCGCAACCCGCTCCAGAAGGCCGCAATTGGCCTGGCGACCGCTGCTGCTGTCGTTCTGGGCACCTTCGCCCCGCTG
EST: GCGCAACCCGCTCCAGAAGGCCGCAATTGGCCTGGCGACCGCTGCTGCTGTCGTTCTGGGCACCTTCGCCCCGCTGEST: gi|16436445|gb|BM001665.1|BM001665
genomic: GCGCAACCCGCTCCAGAAGGCCGCAATTGGCCTGGCGACCGCTGCTGCTGTCGTTCTGGGCACCTTCGCCCCGCTG
EST: GCTTCCCCTTCCAGGTGCCCAAGGAGTACGCCGATCGTCCGCTGCTGCTG GGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGG
genomic: GCTTCCCCTTCCAGGTGCCCAAGGAGTACGCCGATCGTCCGCTGCTGCTGgtgaggagcg ... caccccccagGGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGG
ccacctcgctctcaccgcccctgcccaccgccacaccaccgccgccaccccccagGGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGGCCGCAGACGTTCACGCAGACGGTGGTGCTGGACGGCTACAACGCGCCCG
ctctcac putative branch site (score: 3)
ccacccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcccacctccgcccgcacacacttcccgcccaccaccatccctcccacctcgctctcaccgcccctgcccaccgccacaccaccgccgccaccccccagGGCCGCGCCACGCTGGAGATGAAGGTCAAGTGCGCCCAGACGCCCGAGGGGCCGCAGACGTTCACGCAGACGGTGGTGCTGGACGGCTACAACGCGCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
cgcccac
- - - - - - - -gcacaca
- - - - - - - - - - - - - - - - accacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccac