Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGAAGCAAATTCGCGTACACGTTGACCTCATTCGCGCGGCGGCGGTGACGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGgtcggtagcagcagtctgcggagtttggcacgggtgcacaagccgtgcaggctatgtagcctagtcggcctctggtagggaccgcatggagtaaaaccacgtgggattgagggttggtcatcggcacggtccgtccccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04521
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10794142|gb|AV631508.1|AV631508
EST:     CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAG                         GTGTGCGCGCTGACGAAGCTGTCGTTCGAGCC
genomic: CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGgtcggtagca ... gtccccgcagGTGTGCGCGCTGACGAAGCTGTCGTTCGAGCC
EST: gi|49466862|gb|BP094775.1|BP094775
EST:     CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAG                         GTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
genomic: CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGgtcggtagca ... gtccccgcagGTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
EST: gi|10786815|gb|AV643487.1|AV643487
EST:     CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAG                         GTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
genomic: CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGgtcggtagca ... gtccccgcagGTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
EST: gi|10785342|gb|AV642014.1|AV642014
EST:     CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAG                         GTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
genomic: CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGgtcggtagca ... gtccccgcagGTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
EST: gi|10791792|gb|AV629158.1|AV629158
EST:     CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAG                         GTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG
genomic: CGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGgtcggtagca ... gtccccgcagGTGTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCG