1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGTGCAGGCGCCGGGCCAGGGCCCCATGATGTCGGCGCCGCAGCAGCAGCAACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcccggggacggggtgcgtgttcggcataaacccaacgccgattgtgtgggctgtcgaagctatggctagtgcatgcggctgacttccaatcggccatgtcgtacgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04521 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAG AACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTAEST: gi|10794142|gb|AV631508.1|AV631508
genomic: CAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcc ... gtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
EST: AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAG AACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTAEST: gi|10786815|gb|AV643487.1|AV643487
genomic: AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcc ... gtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
EST: AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAG AACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
genomic: AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcc ... gtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCAGGCGCCGGGCCAGGGCCCCATGATGTCGGCGCCGCAGCAGCAGCAACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcccggggacggggtgcgtgttcggcataaacccaacgccgattgtgtgggctgtcgaagctatggctagtgcatgcggctgacttccaatcggccatgtcgtacgcgcag
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