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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttcccggggacggggtgcgtgttcggcataaacccaacgccgattgtgtgggctgtcgaagctatggctagtgcatgcggctgacttccaatcggccatgtcgtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTACACGTTGACCTCATTCGCGCGGCGGCGGTGACGCAGAAGGCACAACAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04521
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466601|gb|BP094514.1|BP094514
EST:     CAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAG                         AACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
genomic: CAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcc ... gtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
EST: gi|10794142|gb|AV631508.1|AV631508
EST:     AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAG                         AACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
genomic: AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcc ... gtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
EST: gi|10786815|gb|AV643487.1|AV643487
EST:     AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAG                         AACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA
genomic: AACAGCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGgtcagtttcc ... gtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagctatggctagtgcatgcggctgacttccaatcggccatgtcgtacgcgcagAACACGGGAACGTCGCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTACACGTTGACCTCATTCGCGCGGCGGCGGTGACGCAGAAGGCACAACAGC
                     ggctgac  putative branch site (score: 3)