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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaggcggtgggagcggatgtgacggctgcttgggcggggcgcataggtgatatggaggcgcggtccggtgggaacatctggcacccagcgcaaggaacggtaacctcgtgcgtctaaataatgcatacacgccaccttctgtgcaatgcagGGCCCGGTTTGCATGATTCGCTTTTTCGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04519
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23360439|gb|BU648259.1|BU648259
EST:     TCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCG                         GGCCCGGTTTGCATGATTCGCTTTTTCGAG
genomic: TCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCGgtgcgtaggc ... tgcaatgcagGGCCCGGTTTGCATGATTCGCTTTTTCGAG
EST: gi|23358669|gb|BU646489.1|BU646489
EST:     TCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCG                         GGCCCGGTTTGCATGATTCGCTTTTTCGAG
genomic: TCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCGgtgcgtaggc ... tgcaatgcagGGCCCGGTTTGCATGATTCGCTTTTTCGAG
EST: gi|23358668|gb|BU646488.1|BU646488
EST:     TCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGAAGGTGTCGGGCGCG                         GGCCCGGTTTGCATGATTCGCTTTTTCGAG
genomic: TCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCGgtgcgtaggc ... tgcaatgcagGGCCCGGTTTGCATGATTCGCTTTTTCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acggtaacctcgtgcgtctaaataatgcatacacgccaccttctgtgcaatgcagGGCCCGGTTTGCATGATTCGCTTTTTCGAG
               gtctaaa  putative branch site (score: 3)
                                      ccttctgt  putative PPT
                tctaaataat  TA-rich tract