1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactggccctgtatgtgaagaaagaaggcggtggtgcacgtttgtaccgttgggcatgcagcgccgctgagcgggagctttcattgattgccatga...
species | Chlamydomonas reinhardtii |
transcript | EDP04519 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTCGCTGCTCAAGAAGATGCCTGAGG GCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGEST: gi|23358669|gb|BU646489.1|BU646489
genomic: ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactgg ... gcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGG
EST: ATTTCGCTGCTCAAGAAGATGCCTGAGG GCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGEST: gi|23358668|gb|BU646488.1|BU646488
genomic: ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactgg ... gcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGG
EST: ATTTCGCTGCTCAAGAAGATGCCTGAGG GCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGAAGGTGTCGG
genomic: ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactgg ... gcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactggccctgtatgtgaagaaagaaggcggtggtgcacgtttgtaccgttgggcatgcagcgccgctgagcgggagctttcattgattgccatga
- - GCTGCT
- - - - - - AAGAAG
- - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg