1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaagatgccaacccacgatgccaacccgagctgcactgtcagcgggacagttacggcagtaatgcatgcgagcacctctggaatgcatggcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCG
species | Chlamydomonas reinhardtii |
transcript | EDP04519 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGCTGCTCAAGAAGATGCCTGAGG GCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGEST: gi|23358669|gb|BU646489.1|BU646489
genomic: ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactgg ... gcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGG
EST: ATTTCGCTGCTCAAGAAGATGCCTGAGG GCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGEST: gi|23358668|gb|BU646488.1|BU646488
genomic: ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactgg ... gcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGG
EST: ATTTCGCTGCTCAAGAAGATGCCTGAGG GCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGAAGGTGTCGG
genomic: ATTTCGCTGCTCAAGAAGATGCCTGAGGgtgagactgg ... gcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagatgccaacccacgatgccaacccgagctgcactgtcagcgggacagttacggcagtaatgcatgcgagcacctctggaatgcatggcggtcgcagGCAACTTCGACGCAGCCGGAGTCATCCAGGGCACCGTGGAGGAGGTGTCGGGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -caaccca
- - - - - - - - - - - - - - - - - - - - - - - -acagtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatg