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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgagggagcgccttgggctagtgggccacacagcatgctcagaacagatgcctaggctaggcacttttcgctttcgggcatgctcccgcggccttgtaagtcgcctcggtccccctttccgcgcccgcctcctcctcttcctgtcacggccctcagGCGGGCGCCATCGCGTCCTTCCTGCGCGAGCTGCTGCTGAGCAGCTGCCAGCGGCCGGACCTGGTGCAGCAGGACTTCCAGGAGTGCGTCAACATGCACT

Basic information

species Chlamydomonas reinhardtii
transcript EDP04510
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161818466|gb|FC103875.1|FC103875
EST:     TCAACTTCGAGGCGCTGCGGGAAATGCCGGAGCTGGAGCGCGCGTTGCAG                         GCGGGCGCCATCGCGTCCTTCCTGCGCGAGCTGCTGCTGAGCAGCTGCCAG
genomic: TCAACTTCGAGGCGCTGCGGGAAATGCCGGAGCTGGAGCGCGCGTTGCAGgtgcgaggga ... cggccctcagGCGGGCGCCATCGCGTCCTTCCTGCGCGAGCTGCTGCTGAGCAGCTGCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcctcggtccccctttccgcgcccgcctcctcctcttcctgtcacggccctcagGCGGGCGCCATCGCGTCCTTCCTGCGCGAGCTGCTGCTGAGCAGCTGCCAGCGGCCGGACCTGGTGCAGCAGGACTTCCAGGAGTGCGTCAACATGCACT
        tccccctttccgcgcc  CT-rich tract