1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acaagatgcttgccgctcccacggcttgacttgccagcgctgagcattgccaaacccattgctgtctgctgctgcggcaccctctgttggcacctcgcagCTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTGGACCTGCCCACAACCAAAAACTGGAAGACCATGG
species | Chlamydomonas reinhardtii |
transcript | EDP04510 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGG CTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTGEST: gi|161818466|gb|FC103875.1|FC103875
genomic: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGGgtgagtcgcc ... cacctcgcagCTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTG
EST: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTATGG CTGCGTTCAGTGTCTCGGGGGCGGGCCAGCGACGACATTGACGCGCCACTGEST: gi|16431377|gb|BI996603.1|BI996603
genomic: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGGgtgagtcgcc ... cacctcgcagCTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTG
EST: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGG CTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCEST: gi|15697547|gb|BI721852.1|BI721852
genomic: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGGgtgagtcgcc ... cacctcgcagCTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGC
EST: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGG CTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTG
genomic: CCGTGTTCCTCATCGGCGCCTATGCCAAATACAACTGGCCCTACGTCTGGgtgagtcgcc ... cacctcgcagCTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagatgcttgccgctcccacggcttgacttgccagcgctgagcattgccaaacccattgctgtctgctgctgcggcaccctctgttggcacctcgcagCTGCGTTCAGTGTCTCGAGGGCGGGCCAGCGACGACATTGACGCGCCACTGGACCTGCCCACAACCAAAAACTGGAAGACCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - -atgcttg
- - - - - - - -ctcccac
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgc