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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcttgacttgaattggggcctcttgaatgggttacacacggggccaaaacacacgactgacaccacctgtggggctgtggccccaccggtctttgcgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTCACCATCTTCACGGGGTCACAAGTGTCCCCGCGGACGCTGCCGAACTTCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04510
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15702170|gb|BI726475.1|BI726475
EST:     GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAG                         TGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
genomic: GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAGgcaagcttga ... cgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
EST: gi|161818466|gb|FC103875.1|FC103875
EST:     GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATTGGGTGTCTAAAG                         TGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
genomic: GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAGgcaagcttga ... cgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
EST: gi|10768858|gb|AV619683.1|AV619683
EST:     GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAG                         TGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
genomic: GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAGgcaagcttga ... cgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
EST: gi|16431377|gb|BI996603.1|BI996603
EST:     GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAG                         TGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
genomic: GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAGgcaagcttga ... cgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
EST: gi|15697547|gb|BI721852.1|BI721852
EST:     GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAG                         TGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC
genomic: GGCCGCTGGACCAGTTCTACAAGGACTGCTTGCGGATAGGGTGTCTAAAGgcaagcttga ... cgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacgactgacaccacctgtggggctgtggccccaccggtctttgcgtgtgacagTGCTTCAGCCACTTCCACCTGTACCTCAAGGGGCGAGAGGAGCTAGTGGTCACCATCTTCACGGGGTCACAAGTGTCCCCGCGGACGCTGCCGAACTTCC
    gactgac  putative branch site (score: 2)
                                       tctttgc  putative PPT