1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atctgcatgccgcaggggccctggcttctacacccgtgctcagcactcacgctccctttcccctgcccctccaccgaacgtgccgcgtgtcaatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATCCACAACCCCGACGTGACCGTGTTCCTCATCGGCGCCTATGCCAAATAC
species | Chlamydomonas reinhardtii |
transcript | EDP04510 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGG CAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATEST: gi|161818466|gb|FC103875.1|FC103875
genomic: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGGgtaggtggcg ... caatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACAT
EST: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGG CAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATEST: gi|10768858|gb|AV619683.1|AV619683
genomic: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGGgtaggtggcg ... caatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACAT
EST: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGG CAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATEST: gi|16431377|gb|BI996603.1|BI996603
genomic: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGGgtaggtggcg ... caatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACAT
EST: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGG CAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATEST: gi|15697547|gb|BI721852.1|BI721852
genomic: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGGgtaggtggcg ... caatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACAT
EST: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGG CAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACAT
genomic: TCACAAGTGTCCCCGCGGACGCTGCCGAACTTCCGGGCAATCAACGCGGGgtaggtggcg ... caatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACAT
ctcacgctccctttcccctgcccctccaccgaacgtgccgcgtgtcaatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATCCACAACCCCGACGTGACCGTGTTCCTCATCGGCGCCTATGCCAAATAC
cactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgcatgccgcaggggccctggcttctacacccgtgctcagcactcacgctccctttcccctgcccctccaccgaacgtgccgcgtgtcaatacacagCAACGGCAATGCGCTGCCGCCCGCCAGCCCCGCCAGCCACGAGCTGGACATCCACAACCCCGACGTGACCGTGTTCCTCATCGGCGCCTATGCCAAATAC
- ctgcatg
- - - - - - - - - - - - - - -acacccg