1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttcatactgcatcacccggcacggggtggcctgtcgtgtatcgctcaatcgctagataagtaacttgtgccgcctgcccgctgtccttcgttctaacagCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAGCATGTGCAGAGCCGGCGCATCAACTACGTGACCACGCTTTACCAGACGC
species | Chlamydomonas reinhardtii |
transcript | EDP04485 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCANATGAG CGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAGEST: gi|14228432|gb|BG847248.1|BG847248
genomic: AGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCAAATGAGgtgaggcgtt ... gttctaacagCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAG
EST: GGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGGAAGCAAATGAG CGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAGEST: gi|14225560|gb|BG844376.1|BG844376
genomic: GGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGC-GAAGCAAATGAGgtgaggcgtt ... gttctaacagCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAG
EST: AGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCAAATGAG CGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAG
genomic: AGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCAAATGAGgtgaggcgtt ... gttctaacagCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAG
tcaatcgctagataagtaacttgtgccgcctgcccgctgtccttcgttctaacagCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAGCATGTGCAGAGCCGGCGCATCAACTACGTGACCACGCTTTACCAGACGC
aagtaac putative branch site (score: 2)
ctgtccttcgttct putative PPT
ataagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatactgcatcacccggcacggggtggcctgtcgtgtatcgctcaatcgctagataagtaacttgtgccgcctgcccgctgtccttcgttctaacagCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAGCATGTGCAGAGCCGGCGCATCAACTACGTGACCACGCTTTACCAGACGC
- tcatact
- - - - - - - - - - - - - - - - - tcgtgta
- - - - - - - - - - - - - - - - - - - - -tcgctca