1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcgagtagtcgcacagcgtgcatggactgcggagggcattgttcgcagctgtacggaatgccgttgctggaacacgcgtgtccctgggcatggcgcgtgttaaagttgtaccgtaatgctgcgagtcgcttttccgttcaacgcagGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCAAATGAG
species | Chlamydomonas reinhardtii |
transcript | EDP04485 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAG GAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCEST: gi|14228432|gb|BG847248.1|BG847248
genomic: AGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAGgtgagcgagt ... ttcaacgcagGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGC
EST: AGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAG GAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCEST: gi|14225560|gb|BG844376.1|BG844376
genomic: AGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAGgtgagcgagt ... ttcaacgcagGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGC
EST: AGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAG GAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGC
genomic: AGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAGgtgagcgagt ... ttcaacgcagGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGC
ggcgcgtgttaaagttgtaccgtaatgctgcgagtcgcttttccgttcaacgcagGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCAAATGAG
tcgcttttccgttc CT-rich tract
ttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgagtagtcgcacagcgtgcatggactgcggagggcattgttcgcagctgtacggaatgccgttgctggaacacgcgtgtccctgggcatggcgcgtgttaaagttgtaccgtaatgctgcgagtcgcttttccgttcaacgcagGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGAAGCAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA