Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCCCAAACCTCGGGAGCGGCATGACACTTCCGCAGTGGACCCCACCTACCTCAACACAGCGGTCTACCGCACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctggcgcgaatttaagggctcgctctctgtgcacgctgtagccatagcgtcctgcatacaggtaattgcattgcgggttttaacatcctggatgggcatacgggcgcactgttggacttcgtactgcccgtcacgcccatcgtccttcgcccgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04485
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14238883|gb|BG857699.1|BG857699
EST:     TACCTCAACACAGCGGTCTACCGCACCGTGCCGGGGCTAGGTCGTGTCTA                         TGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
genomic: TACCTCAACACAGCGGTCTACCGCACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctgg ... gcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
EST: gi|14228432|gb|BG847248.1|BG847248
EST:     ACCGTGCCGGGGCTAGGTCGTGTCTA                         TGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
genomic: ACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctgg ... gcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
EST: gi|14225560|gb|BG844376.1|BG844376
EST:     ACCGTGCCGGGGCTAGGTCGTGTCTA                         TGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
genomic: ACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctgg ... gcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA