1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtctggcgcgaatttaagggctcgctctctgtgcacgctgtagccatagcgtcctgcatacaggtaattgcattgcgggttttaacatcctggatgggcatacgggcgcactgttggacttcgtactgcccgtcacgcccatcgtccttcgcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAG
species | Chlamydomonas reinhardtii |
transcript | EDP04485 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACCTCAACACAGCGGTCTACCGCACCGTGCCGGGGCTAGGTCGTGTCTA TGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAEST: gi|14228432|gb|BG847248.1|BG847248
genomic: TACCTCAACACAGCGGTCTACCGCACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctgg ... gcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
EST: ACCGTGCCGGGGCTAGGTCGTGTCTA TGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAEST: gi|14225560|gb|BG844376.1|BG844376
genomic: ACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctgg ... gcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
EST: ACCGTGCCGGGGCTAGGTCGTGTCTA TGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
genomic: ACCGTGCCGGGGCTAGGTCGTGTCTAgtaagtctgg ... gcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAA
gcgcactgttggacttcgtactgcccgtcacgcccatcgtccttcgcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAG
tccttcgccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctggcgcgaatttaagggctcgctctctgtgcacgctgtagccatagcgtcctgcatacaggtaattgcattgcgggttttaacatcctggatgggcatacgggcgcactgttggacttcgtactgcccgtcacgcccatcgtccttcgcccgcgcagTGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG