1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGTCCACAAACGTGGAGAAGGCGTTCCAGCAAATCCTGACGGAGATCTACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtggcgaggggtacttgggacctgggaagcggtgggcgcaggcgcaggcagatgctgctggttgccacccgcgcactcatgcgactgccgggcgacgtccagtgtaattgtgcgctgaccgtgcccatgctcccttgcctacag
species | Chlamydomonas reinhardtii |
transcript | EDP04353 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACEST: gi|16434796|gb|BM000016.1|BM000016
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGAC
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGAEST: gi|161815543|gb|FC101788.1|FC101788
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACTGAEST: gi|23363627|gb|BU651447.1|BU651447
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGAEST: gi|161798278|gb|FC083487.1|FC083487
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGAEST: gi|23363628|gb|BU651448.1|BU651448
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGAEST: gi|161821621|gb|FC108746.1|FC108746
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGAEST: gi|23359663|gb|BU647483.1|BU647483
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: CCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAAACCG-CCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGEST: gi|15694779|gb|BI719084.1|BI719084
genomic: CCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAA-CCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACG
EST: ATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGAEST: gi|10772153|gb|AV622976.1|AV622976
genomic: ATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
EST: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAG ATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
genomic: ACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtg ... ttgcctacagATTGGCGAGGGTCGCGATGTTATCGTGATCGACAACGCGCACGACGACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTCCACAAACGTGGAGAAGGCGTTCCAGCAAATCCTGACGGAGATCTACCACATCGTCAGCAAGAAGGTGCTGGACAGCGAAGACAACCGGCCAAAGgtgggaggtggcgaggggtacttgggacctgggaagcggtgggcgcaggcgcaggcagatgctgctggttgccacccgcgcactcatgcgactgccgggcgacgtccagtgtaattgtgcgctgaccgtgcccatgctcccttgcctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA