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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCCTGCAAACTTAGCTAGCAGATATCTTCACTCTACTGCGGCATTTTTCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctagcaaggttgactgctgcattagtgacttgggcgcggtcgtgagggaactggcagagcgaggaccctgctctgacccccacccgacctcctgccttccctccttgtctccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04353
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161804362|gb|FC089704.1|FC089704
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|9459748|gb|BE452889.1|BE452889
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|161815543|gb|FC101788.1|FC101788
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|161798278|gb|FC083487.1|FC083487
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|9459215|gb|BE452496.1|BE452496
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|161821621|gb|FC108746.1|FC108746
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|9441236|gb|BE441840.1|BE441840
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|23359663|gb|BU647483.1|BU647483
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|16071620|gb|BI873616.1|BI873616
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|15701542|gb|BI725847.1|BI725847
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|6541367|gb|AV387151.1|AV387151
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|8828268|gb|BE211998.1|BE211998
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAA-GAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAA-GTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|16073328|gb|BI875324.1|BI875324
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA