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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACATTTGAGAACGTGGAGCGGTGGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctcggcacctgctggtagcaagcggtcaatgaaaatgccgggggcgaacgggttttacatgtggtagctcaagggggtcaggctggaccccgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04353
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161804362|gb|FC089704.1|FC089704
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGACCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|9459748|gb|BE452889.1|BE452889
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|161815543|gb|FC101788.1|FC101788
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGACCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|161798278|gb|FC083487.1|FC083487
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGACCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|23363628|gb|BU651448.1|BU651448
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|9459215|gb|BE452496.1|BE452496
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|161821621|gb|FC108746.1|FC108746
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGACCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|9441236|gb|BE441840.1|BE441840
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGACCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|23359663|gb|BU647483.1|BU647483
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|16071620|gb|BI873616.1|BI873616
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|15701542|gb|BI725847.1|BI725847
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|6541367|gb|AV387151.1|AV387151
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|10772153|gb|AV622976.1|AV622976
EST:     GGTTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
EST: gi|8828268|gb|BE211998.1|BE211998
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGC
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGC
EST: gi|16073328|gb|BI875324.1|BI875324
EST:     GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTG                         GTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG
genomic: GGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctc ... ccgcatgcagGTCGGCAACAAGAGCGATCTGAAGCACCTGCGTGACGTGCAGACGGAGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACATTTGAGAACGTGGAGCGGTGGCTAAAGGAGCTGCGCGACCACGCAGACTCCAACATTGTGATCATGCTGgtgagccctcggcacctgctggtagcaagcggtcaatgaaaatgccgggggcgaacgggttttacatgtggtagctcaagggggtcaggctggaccccgg

- - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt