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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctagcaaggttgactgctgcattagtgacttgggcgcggtcgtgagggaactggcagagcgaggaccctgctctgacccccacccgacctcctgccttccctccttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAAGTCCAATCTGCTCTCCCGTTTCACGAGGAATGAGTTCAGCCTCGAGTCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04353
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP04353 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S26_33V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgagtctagca-aggttgactgctgcattagtgacttgggcgcggtcgtgagggaactggcagagcgaggaccctgct-------ctgacccccacccgacctcc----tgccttccctccttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAAGTCCAATCTGCTCTCCCGTTTCACGAGGAATGAGTTCAGCCTCGAGTCC
||||||  |    | |  |  | |    ||  |||     | |   |    |||    |   || | ||   |  |  |       | |    | | |     |      || |   |      |    |   || ||||| || |||||||||||| ||||||| ||||| || ||||| ||||||||||| || ||| | || |||                        
gtgagttaaatttatgaaggtttcgtggtttttgatggtagtgttttttctaggtgcttcagagtgagacagctttatttgttagtcgggttgctaacaagtttagaagATGGCGCACAAGGCGGATGACGAGTACGACTATCTGTTCAAGGTGGTGTTGATTGGAGATTCTGGTGTCGGGAAGTCCAATCTACTATCCAGATTTACGC-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161804362|gb|FC089704.1|FC089704
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|9459748|gb|BE452889.1|BE452889
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|161815543|gb|FC101788.1|FC101788
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|161798278|gb|FC083487.1|FC083487
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|9459215|gb|BE452496.1|BE452496
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|161821621|gb|FC108746.1|FC108746
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|9441236|gb|BE441840.1|BE441840
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|23359663|gb|BU647483.1|BU647483
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|16071620|gb|BI873616.1|BI873616
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|15701542|gb|BI725847.1|BI725847
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|6541367|gb|AV387151.1|AV387151
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|8828268|gb|BE211998.1|BE211998
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAA-GAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAA-GTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
EST: gi|16073328|gb|BI875324.1|BI875324
EST:     TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGA                         CTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA
genomic: TCTGCACCTGTCGGTTCCTCTCAGAAAATGAGCCACAAGCCAGACGACGAgtgagtctag ... ttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaggaccctgctctgacccccacccgacctcctgccttccctccttgtctccagCTATGACTACCTCTTCAAGGTGGTGCTGATTGGTGATTCGGGCGTCGGCAAGTCCAATCTGCTCTCCCGTTTCACGAGGAATGAGTTCAGCCTCGAGTCC
           ctctgac  putative branch site (score: 3)
                 cccccacccgacctcc  CT-rich tract