Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCAACTTGTCCGATGGCTACACGGACAAAATCTGCTATCTTGCGGCCAACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtgacgtggtctgcgccggcggatgtcacggctgggcagggcggggatgcgggtagtgcagggggtgggtacgtgtcacacagcaccacgtactccgacgcgcccgccagcggccctgggactaagcaacaacatccctacgtacgcatacacaccctctgggcatacacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04324
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784099|gb|AV640771.1|AV640771
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|6550066|gb|AV395850.1|AV395850
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|6548856|gb|AV394640.1|AV394640
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|10787334|gb|AV644006.1|AV644006
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|6551147|gb|AV396931.1|AV396931
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|10793058|gb|AV630424.1|AV630424
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT