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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggggtgacgtggtctgcgccggcggatgtcacggctgggcagggcggggatgcgggtagtgcagggggtgggtacgtgtcacacagcaccacgtactccgacgcgcccgccagcggccctgggactaagcaacaacatccctacgtacgcatacacaccctctgggcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCATGTGGTCACTGCGGACACGGGGCCGGAGGCGCTGCTGGTGGTGTGGAACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04324
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784099|gb|AV640771.1|AV640771
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|6550066|gb|AV395850.1|AV395850
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|6548856|gb|AV394640.1|AV394640
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|10787334|gb|AV644006.1|AV644006
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|6551147|gb|AV396931.1|AV396931
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
EST: gi|10793058|gb|AV630424.1|AV630424
EST:     ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAG                         GGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT
genomic: ACACCGCGGTCATCTATGATAAACGTTTGAGGCGGCAATTGTTCTTACAGgtgcggggtg ... gcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggggtgacgtggtctgcgccggcggatgtcacggctgggcagggcggggatgcgggtagtgcagggggtgggtacgtgtcacacagcaccacgtactccgacgcgcccgccagcggccctgggactaagcaacaacatccctacgtacgcatacacaccctctgggcatacacagGGCCACACCAGCCCCATCACATGCATCGTGACCACGGAGGACCGCTCGCATGTGGTCACTGCGGACACGGGGCCGGAGGCGCTGCTGGTGGTGTGGAACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG