1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACACACCAAGTTCCAAATTCTGGAAGGCCGCGCTTCCGCACATCAAATGTCTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgctcacttgcagaacttagcatgcgtccagcgccgcgtccccgtctgctgatgctgggctaaccgggcatctccttgcactgtgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04324 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACAGACCGCCCTG TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCEST: gi|6550066|gb|AV395850.1|AV395850
genomic: GAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCEST: gi|6548856|gb|AV394640.1|AV394640
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCEST: gi|10787334|gb|AV644006.1|AV644006
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCEST: gi|6551147|gb|AV396931.1|AV396931
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCEST: gi|10793058|gb|AV630424.1|AV630424
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACACCAAGTTCCAAATTCTGGAAGGCCGCGCTTCCGCACATCAAATGTCTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgctcacttgcagaacttagcatgcgtccagcgccgcgtccccgtctgctgatgctgggctaaccgggcatctccttgcactgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC