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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtgctcacttgcagaacttagcatgcgtccagcgccgcgtccccgtctgctgatgctgggctaaccgggcatctccttgcactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCAACTTGTCCGATGGCTACACGGACAAAATCTGCTATCTTGCGGCCAACA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04324
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784099|gb|AV640771.1|AV640771
EST:     GAACAGACCGCCCTG                         TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: GAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: gi|6550066|gb|AV395850.1|AV395850
EST:     CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG                         TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: gi|6548856|gb|AV394640.1|AV394640
EST:     CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG                         TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: gi|10787334|gb|AV644006.1|AV644006
EST:     CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG                         TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: gi|6551147|gb|AV396931.1|AV396931
EST:     CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG                         TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
EST: gi|10793058|gb|AV630424.1|AV630424
EST:     CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTG                         TCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC
genomic: CTTAGCAGAAACATAGTTGATATCAAATGGCTGAAGAACAGACCGCCCTGgtgaggtgct ... cactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcgtccccgtctgctgatgctgggctaaccgggcatctccttgcactgtgcagTCACTTAGCTGGGTCTTCGGGGCCTCGGCGCACGTAAAGCATGGTGTAGTCAACTTGTCCGATGGCTACACGGACAAAATCTGCTATCTTGCGGCCAACA
                        ggctaac  putative branch site (score: 2)
 tctccttgc  putative PPT