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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggggggcgggcgagcggcggttggcgggcagggaagggcgacggccctctgcgggagacgtgagtctcagggctatcgtggtccttgattggtacgatatgcgtgggcctttgcgtgatggacaccgctaacccgcgtgctccggctggcataccccggtcattccgttcacacagGAACAAGAACCAGTGCCGCGGCTGGGTGGGCTTTTCCAACAAGATGGCGCACCGCATCACCGCCGCCGCCGACATCCTGCTCATGCCCTCGCGCTTTGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04319
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785359|gb|AV642031.1|AV642031
EST:     GGCAGCGGGCGGCAGGACCTGGAGGACGCGCTGCGGGACATGGAGAACAG                         GAACAAGAACCAGTGCCGCGGCTGGGTGGGCTTTTCCAACAAGATGGCGCA
genomic: GGCAGCGGGCGGCAGGACCTGGAGGACGCGCTGCGGGACATGGAGAACAGgtgcgggggg ... gttcacacagGAACAAGAACCAGTGCCGCGGCTGGGTGGGCTTTTCCAACAAGATGGCGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaccgctaacccgcgtgctccggctggcataccccggtcattccgttcacacagGAACAAGAACCAGTGCCGCGGCTGGGTGGGCTTTTCCAACAAGATGGCGCACCGCATCACCGCCGCCGCCGACATCCTGCTCATGCCCTCGCGCTTTGAG
    cgctaac  putative branch site (score: 2)
                                         ttccgttc  putative PPT