1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCACCGCGTGATGGTGGTGGTGCCCCGGTATGAGAACTACGACAACGCCTGGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAGgtgcgcggcggacagctggccgggcattgtgggtttcttctcgcttaatggttgcggcagggctccacggagccgcgccaggtcatgcgcatgcagctct...
species | Chlamydomonas reinhardtii |
transcript | EDP04319 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAG GTGGGCTACTTCCACGCATTTGTGGACGGCGTGGACTACGTGTTTGTGGACEST: gi|10790522|gb|AV627888.1|AV627888
genomic: GGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAGgtgcgcggcg ... gcttgtgcagGTGGGCTACTTCCACGCATTTGTGGACGGCGTGGACTACGTGTTTGTGGAC
EST: GGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAG GTGGGCTACTTCCACGCATTTGTGGACGGCGTGGACTACGTGTTTGTGGACEST: gi|15703991|gb|BI728296.1|BI728296
genomic: GGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAGgtgcgcggcg ... gcttgtgcagGTGGGCTACTTCCACGCATTTGTGGACGGCGTGGACTACGTGTTTGTGGAC
EST: GGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAG GTGGGCTACTTCCACGCATTTGTGGACGGCGTGGACTACGTGTTTGTGGAC
genomic: GGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAGgtgcgcggcg ... gcttgtgcagGTGGGCTACTTCCACGCATTTGTGGACGGCGTGGACTACGTGTTTGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCGCGTGATGGTGGTGGTGCCCCGGTATGAGAACTACGACAACGCCTGGGAGACAGGCATCCGCAAAATCTACTCGGTCTTCAACTCCAACCAAGAGgtgcgcggcggacagctggccgggcattgtgggtttcttctcgcttaatggttgcggcagggctccacggagccgcgccaggtcatgcgcatgcagctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgcat