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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcagtttgaaatgatatccattgatgaaaatgcgacttgggtgacgcgctcagcaagggcttgaccctccaactcagCAAGGAATGGCCGGCCCACGTTTGCAGGCGTTCCTCGCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04319
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6549681|gb|AV395465.1|AV395465
EST:     GGGTGTCACTCAGAACGGCCTCGCAAGCCCCAGCGGACGCGGTGCTCGAT                         CAAGGAATGGCCGGCCCACGTTTGCAGGCGTTCCTCGCGCGGGCGACGGTC
genomic: GGGTGTCACTCAGAACGGCCTCGCAAGCCCCAGCGGACGCGGTGCTCGATgtaagttgca ... tccaactcagCAAGGAATGGCCGGCCCACGTTTGCAGGCGTTCCTCGCGCGGGCGACGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaaaatgcgacttgggtgacgcgctcagcaagggcttgaccctccaactcagCAAGGAATGGCCGGCCCACGTTTGCAGGCGTTCCTCGCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAG
                                    gcttgac  putative branch site (score: 4)
                                          ccctcc  CT-rich tract