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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtttgaggtgcataggccgcgtaacagccttcggcgcaaaggcaaattcctcgcttgcatgtcctttcgcgccctttctggagcattattcctgctcgctttgccctgcagATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGCTTGGCCGCTGAAACGGCCGCGCGCACCGCTGCCACGCCCGCTTCGGCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04319
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789679|gb|AV627044.1|AV627044
EST:     GCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAG                         ATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGC
genomic: GCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAGgtaagttgtt ... tgccctgcagATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGC
EST: gi|6549681|gb|AV395465.1|AV395465
EST:     GCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAG                         ATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGC
genomic: GCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAGgtaagttgtt ... tgccctgcagATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGC
EST: gi|6548666|gb|AV394450.1|AV394450
EST:     GCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAG                         ATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGC
genomic: GCGCGGGCGACGGTCGCCTGAGCGACGTGCAGCGTGACCTCCTTGCAGAGgtaagttgtt ... tgccctgcagATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgtcctttcgcgccctttctggagcattattcctgctcgctttgccctgcagATCGAGGCACGTCGCAAGAATCAAGCTCAGCTCCTTGAGAAACTTAACCGCTTGGCCGCTGAAACGGCCGCGCGCACCGCTGCCACGCCCGCTTCGGCTG
                                ttcctgctcgcttt  CT-rich tract
                            attatt  TA-rich tract